Detailed information of SNP:
|
SNP ID:
sf0501809164(Gbrowse)
Chromosome: chr05 Position: 1809164 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1381 | 59.30% | 40.70% |
| All Indica | 764 | 28.80% | 71.20% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 352 | 20.45% | 79.55% |
| Indica II | 207 | 41.55% | 58.45% |
| Indica Intermediate | 205 | 30.24% | 69.76% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501809164 | T->G | LOC_Os05g04020(LOC_Os05g04020.1) | Non-Synonymous SNP |