Detailed information of SNP:
|
SNP ID:
sf0501809208(Gbrowse)
Chromosome: chr05 Position: 1809208 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 75.23% | 24.77% |
| All Indica | 798 | 93.61% | 6.39% |
| All Japonica | 497 | 54.33% | 45.67% |
| Aus | 66 | 10.61% | 89.39% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 65.37% | 34.63% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501809208 | T->A | LOC_Os05g04020(LOC_Os05g04020.1) | Non-Synonymous SNP |