Detailed information of SNP:
|
SNP ID:
sf0501810255(Gbrowse)
Chromosome: chr05 Position: 1810255 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 50.21% | 49.79% |
| All Indica | 792 | 14.90% | 85.10% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 1.07% | 98.93% |
| Indica II | 207 | 31.88% | 68.12% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501810255 | G->A | LOC_Os05g04020(LOC_Os05g04020.1) | INTRON |