Detailed information of SNP:
|
SNP ID:
sf0501827623(Gbrowse)
Chromosome: chr05 Position: 1827623 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 72.02% | 27.98% |
| All Indica | 789 | 82.00% | 18.00% |
| All Japonica | 496 | 55.65% | 44.35% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 370 | 96.49% | 3.51% |
| Indica II | 212 | 65.09% | 34.91% |
| Indica Intermediate | 207 | 73.43% | 26.57% |
| Temperate Japonica | 334 | 64.67% | 35.33% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501827623 | A->G | INTERGENIC | None |