Detailed information of SNP:
|
SNP ID:
sf0501865567(Gbrowse)
Chromosome: chr05 Position: 1865567 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.81% | 12.19% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 68.00% | 32.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501865567 | G->A | LOC_Os05g04160(LOC_Os05g04160.1) | Non-Synonymous SNP |