Detailed information of SNP:



SNP ID: sf0501904107(Gbrowse)

Chromosome: chr05

Position: 1904107
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1414 83.73% 16.27%
All Indica799 99.50% 0.50%
All Japonica495 57.58% 42.42%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica334 66.17% 33.83%
Tropical Japonica94 41.49% 58.51%
Japonica Intermediate67 37.31% 62.69%
Group VI/Aromatic11 36.36% 63.64%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0501904107 C->A INTERGENIC None