Detailed information of SNP:
|
SNP ID:
sf0501904107(Gbrowse)
Chromosome: chr05 Position: 1904107 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 83.73% | 16.27% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 495 | 57.58% | 42.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 66.17% | 33.83% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 11 | 36.36% | 63.64% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501904107 | C->A | INTERGENIC | None |