Detailed information of SNP:
SNP ID:
sf0501904107(Gbrowse)
Chromosome: chr05 Position: 1904107 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1414 | 83.73% | 16.27% |
All Indica | 799 | 99.50% | 0.50% |
All Japonica | 495 | 57.58% | 42.42% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 100.00% | 0.00% |
Indica II | 213 | 98.59% | 1.41% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 334 | 66.17% | 33.83% |
Tropical Japonica | 94 | 41.49% | 58.51% |
Japonica Intermediate | 67 | 37.31% | 62.69% |
Group VI/Aromatic | 11 | 36.36% | 63.64% |
Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0501904107 | C->A | INTERGENIC | None |