Detailed information of SNP:
|
SNP ID:
sf0501932411(Gbrowse)
Chromosome: chr05 Position: 1932411 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 66.38% | 33.62% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 475 | 10.11% | 89.89% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 322 | 5.90% | 94.10% |
| Tropical Japonica | 87 | 20.69% | 79.31% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501932411 | T->C | LOC_Os05g04240(LOC_Os05g04240.1) | INTRON |