Detailed information of SNP:
|
SNP ID:
sf0501941743(Gbrowse)
Chromosome: chr05 Position: 1941743 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 72.44% | 27.56% |
| All Indica | 792 | 91.92% | 8.08% |
| All Japonica | 493 | 37.12% | 62.88% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 79.05% | 20.95% |
| Indica Intermediate | 207 | 90.82% | 9.18% |
| Temperate Japonica | 332 | 24.40% | 75.60% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501941743 | T->C | LOC_Os05g04260(LOC_Os05g04260.1) | Non-Synonymous SNP |