Detailed information of SNP:
|
SNP ID:
sf0501973460(Gbrowse)
Chromosome: chr05 Position: 1973460 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.81% | 44.19% |
| All Indica | 799 | 33.29% | 66.71% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 36.00% | 64.00% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501973460 | C->T | LOC_Os05g04330(LOC_Os05g04330.1) | Non-Synonymous SNP |
| sf0501973460 | C->T | LOC_Os05g04330(LOC_Os05g04330.2) | INTRON |