Detailed information of SNP:
|
SNP ID:
sf0501987108(Gbrowse)
Chromosome: chr05 Position: 1987108 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 96.94% | 3.06% |
| All Indica | 729 | 94.92% | 5.08% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 327 | 92.66% | 7.34% |
| Indica II | 204 | 97.55% | 2.45% |
| Indica Intermediate | 198 | 95.96% | 4.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501987108 | A->T | LOC_Os05g04350(LOC_Os05g04350.1) | Synonymous |