Detailed information of SNP:
|
SNP ID:
sf0501988240(Gbrowse)
Chromosome: chr05 Position: 1988240 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 64.03% | 35.97% |
| All Indica | 793 | 98.11% | 1.89% |
| All Japonica | 494 | 4.86% | 95.14% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 99.46% | 0.54% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 65 | 13.85% | 86.15% |
| Group VI/Aromatic | 8 | 87.50% | 12.50% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0501988240 | C->G | INTERGENIC | None |