Detailed information of SNP:
|
SNP ID:
sf0502009128(Gbrowse)
Chromosome: chr05 Position: 2009128 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.33% | 43.67% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 494 | 3.24% | 96.76% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 91 | 3.30% | 96.70% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502009128 | T->C | INTERGENIC | None |