Detailed information of SNP:
|
SNP ID:
sf0502032599(Gbrowse)
Chromosome: chr05 Position: 2032599 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1349 | 97.41% | 2.59% |
| All Indica | 749 | 96.66% | 3.34% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 63 | 88.89% | 11.11% |
| Indica I | 353 | 97.17% | 2.83% |
| Indica II | 196 | 98.47% | 1.53% |
| Indica Intermediate | 200 | 94.00% | 6.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 57.14% | 42.86% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502032599 | T->C | INTERGENIC | None |