Detailed information of SNP:
|
SNP ID:
sf0502034813(Gbrowse)
Chromosome: chr05 Position: 2034813 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 97.70% | 2.30% |
| All Indica | 776 | 96.91% | 3.09% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 204 | 95.10% | 4.90% |
| Indica Intermediate | 204 | 94.12% | 5.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502034813 | C->T | LOC_Os05g04420(LOC_Os05g04420.1) | Synonymous |