Detailed information of SNP:
|
SNP ID:
sf0502041455(Gbrowse)
Chromosome: chr05 Position: 2041455 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 92.60% | 7.40% |
| All Indica | 789 | 87.45% | 12.55% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 210 | 77.14% | 22.86% |
| Indica Intermediate | 208 | 81.25% | 18.75% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502041455 | G->A | LOC_Os05g04430(LOC_Os05g04430.1) | Synonymous |