Detailed information of SNP:
|
SNP ID:
sf0502042524(Gbrowse)
Chromosome: chr05 Position: 2042524 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.10% | 4.90% |
| All Indica | 790 | 92.78% | 7.22% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 207 | 91.30% | 8.70% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502042524 | G->A | LOC_Os05g04430(LOC_Os05g04430.1) | Synonymous |