Detailed information of SNP:
|
SNP ID:
sf0502043725(Gbrowse)
Chromosome: chr05 Position: 2043725 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 96.02% | 3.98% |
| All Indica | 792 | 95.33% | 4.67% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 61.54% | 38.46% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502043725 | A->G | INTERGENIC | None |