Detailed information of SNP:
|
SNP ID:
sf0502049734(Gbrowse)
Chromosome: chr05 Position: 2049734 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 50.26% | 49.74% |
| All Indica | 752 | 18.75% | 81.25% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 53 | 37.74% | 62.26% |
| Indica I | 362 | 13.54% | 86.46% |
| Indica II | 186 | 21.51% | 78.49% |
| Indica Intermediate | 204 | 25.49% | 74.51% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502049734 | G->A | INTERGENIC | None |