Detailed information of SNP:
|
SNP ID:
sf0502049775(Gbrowse)
Chromosome: chr05 Position: 2049775 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 53.21% | 46.79% |
| All Indica | 752 | 19.55% | 80.45% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 363 | 13.77% | 86.23% |
| Indica II | 189 | 24.87% | 75.13% |
| Indica Intermediate | 200 | 25.00% | 75.00% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502049775 | G->A | INTERGENIC | None |