Detailed information of SNP:
|
SNP ID:
sf0502074186(Gbrowse)
Chromosome: chr05 Position: 2074186 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 61.54% | 38.46% |
| All Indica | 798 | 36.84% | 63.16% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 35.83% | 64.17% |
| Indica II | 213 | 35.68% | 64.32% |
| Indica Intermediate | 211 | 39.81% | 60.19% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502074186 | G->A | LOC_Os05g04490(LOC_Os05g04490.1) | INTRON |