Detailed information of SNP:
|
SNP ID:
sf0502090739(Gbrowse)
Chromosome: chr05 Position: 2090739 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 83.27% | 16.73% |
| All Indica | 799 | 71.46% | 28.54% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502090739 | C->T | LOC_Os05g04510(LOC_Os05g04510.2) | Synonymous |
| sf0502090739 | C->T | LOC_Os05g04510(LOC_Os05g04510.1) | Synonymous |