Detailed information of SNP:
|
SNP ID:
sf0502095235(Gbrowse)
Chromosome: chr05 Position: 2095235 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.48% | 48.52% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 496 | 2.02% | 97.98% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502095235 | C->T | INTERGENIC | None |