Detailed information of SNP:
|
SNP ID:
sf0502115955(Gbrowse)
Chromosome: chr05 Position: 2115955 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1311 | 97.25% | 2.75% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 395 | 90.89% | 9.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 257 | 86.38% | 13.62% |
| Tropical Japonica | 81 | 100.00% | 0.00% |
| Japonica Intermediate | 57 | 98.25% | 1.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502115955 | A->G | LOC_Os05g04550(LOC_Os05g04550.1) | INTRON |
| sf0502115955 | A->G | LOC_Os05g04550(LOC_Os05g04550.2) | INTRON |