Detailed information of SNP:
|
SNP ID:
sf0502116963(Gbrowse)
Chromosome: chr05 Position: 2116963 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1335 | 97.23% | 2.77% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 415 | 91.57% | 8.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 91.07% | 8.93% |
| Tropical Japonica | 80 | 96.25% | 3.75% |
| Japonica Intermediate | 55 | 87.27% | 12.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502116963 | C->A | LOC_Os05g04550(LOC_Os05g04550.1) | SNPs that introduce stop codons |
| sf0502116963 | C->A | LOC_Os05g04550(LOC_Os05g04550.2) | SNPs that introduce stop codons |