Detailed information of SNP:
|
SNP ID:
sf0502119729(Gbrowse)
Chromosome: chr05 Position: 2119729 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.41% | 38.59% |
| All Indica | 796 | 91.21% | 8.79% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 209 | 91.87% | 8.13% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502119729 | T->A | INTERGENIC | None |