Detailed information of SNP:
|
SNP ID:
sf0502125315(Gbrowse)
Chromosome: chr05 Position: 2125315 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 91.51% | 8.49% |
| All Indica | 783 | 85.31% | 14.69% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 91.35% | 8.65% |
| Indica II | 207 | 75.36% | 24.64% |
| Indica Intermediate | 206 | 84.47% | 15.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502125315 | G->A | LOC_Os05g04560(LOC_Os05g04560.2) | INTRON |
| sf0502125315 | G->A | LOC_Os05g04560(LOC_Os05g04560.3) | INTRON |
| sf0502125315 | G->A | LOC_Os05g04560(LOC_Os05g04560.1) | INTRON |
| sf0502125315 | G->A | LOC_Os05g04560(LOC_Os05g04560.4) | INTRON |