Detailed information of SNP:
|
SNP ID:
sf0502151228(Gbrowse)
Chromosome: chr05 Position: 2151228 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1375 | 57.89% | 42.11% |
| All Indica | 759 | 94.20% | 5.80% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 181 | 92.82% | 7.18% |
| Indica Intermediate | 203 | 91.13% | 8.87% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 38 | 55.26% | 44.74% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502151228 | A->G | INTERGENIC | None |