Detailed information of SNP:
|
SNP ID:
sf0502152897(Gbrowse)
Chromosome: chr05 Position: 2152897 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 50.28% | 49.72% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502152897 | A->G | INTERGENIC | None |