Detailed information of SNP:
|
SNP ID:
sf0502158053(Gbrowse)
Chromosome: chr05 Position: 2158053 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 95.86% | 4.14% |
| All Indica | 758 | 92.74% | 7.26% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 352 | 89.77% | 10.23% |
| Indica II | 200 | 96.00% | 4.00% |
| Indica Intermediate | 206 | 94.66% | 5.34% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502158053 | C->T | INTERGENIC | None |