Detailed information of SNP:
|
SNP ID:
sf0502159342(Gbrowse)
Chromosome: chr05 Position: 2159342 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 88.45% | 11.55% |
| All Indica | 791 | 84.45% | 15.55% |
| All Japonica | 497 | 92.96% | 7.04% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 73.19% | 26.81% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 96.62% | 3.38% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502159342 | C->T | INTERGENIC | None |