Detailed information of SNP:
|
SNP ID:
sf0502167670(Gbrowse)
Chromosome: chr05 Position: 2167670 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 52.82% | 47.18% |
| All Indica | 799 | 33.17% | 66.83% |
| All Japonica | 495 | 88.28% | 11.72% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 31.47% | 68.53% |
| Indica II | 213 | 34.74% | 65.26% |
| Indica Intermediate | 211 | 34.60% | 65.40% |
| Temperate Japonica | 335 | 94.63% | 5.37% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502167670 | G->A | INTERGENIC | None |