Detailed information of SNP:
|
SNP ID:
sf0502177214(Gbrowse)
Chromosome: chr05 Position: 2177214 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 97.60% | 2.40% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 93.13% | 6.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 89.79% | 10.21% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502177214 | G->A | LOC_Os05g04630(LOC_Os05g04630.2) | INTRON |
| sf0502177214 | G->A | LOC_Os05g04630(LOC_Os05g04630.3) | INTRON |
| sf0502177214 | G->A | LOC_Os05g04630(LOC_Os05g04630.4) | INTRON |
| sf0502177214 | G->A | LOC_Os05g04630(LOC_Os05g04630.5) | INTRON |
| sf0502177214 | G->A | LOC_Os05g04630(LOC_Os05g04630.1) | INTRON |
| sf0502177214 | G->A | LOC_Os05g04630(LOC_Os05g04630.6) | INTRON |