Detailed information of SNP:
|
SNP ID:
sf0502188046(Gbrowse)
Chromosome: chr05 Position: 2188046 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.28% | 39.72% |
| All Indica | 795 | 32.20% | 67.80% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 33.07% | 66.93% |
| Indica II | 212 | 37.26% | 62.74% |
| Indica Intermediate | 208 | 25.48% | 74.52% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502188046 | C->T | INTERGENIC | None |