Detailed information of SNP:
|
SNP ID:
sf0502193413(Gbrowse)
Chromosome: chr05 Position: 2193413 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 84.32% | 15.68% |
| All Indica | 797 | 73.65% | 26.35% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 69.44% | 30.56% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502193413 | G->A | INTERGENIC | None |