Detailed information of SNP:
|
SNP ID:
sf0502212430(Gbrowse)
Chromosome: chr05 Position: 2212430 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 63.68% | 36.32% |
| All Indica | 798 | 37.97% | 62.03% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 210 | 41.43% | 58.57% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502212430 | G->A | INTERGENIC | None |