Detailed information of SNP:
|
SNP ID:
sf0502217268(Gbrowse)
Chromosome: chr05 Position: 2217268 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 78.95% | 21.05% |
| All Indica | 797 | 68.88% | 31.12% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 67.73% | 32.27% |
| Indica II | 211 | 69.67% | 30.33% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502217268 | T->C | INTERGENIC | None |