Detailed information of SNP:
|
SNP ID:
sf0502220828(Gbrowse)
Chromosome: chr05 Position: 2220828 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 93.44% | 6.56% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502220828 | T->C | INTERGENIC | None |