Detailed information of SNP:
|
SNP ID:
sf0502226539(Gbrowse)
Chromosome: chr05 Position: 2226539 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1399 | 88.49% | 11.51% |
| All Indica | 796 | 89.70% | 10.30% |
| All Japonica | 495 | 90.71% | 9.29% |
| Aus | 52 | 84.62% | 15.38% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 211 | 84.36% | 15.64% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 92 | 73.91% | 26.09% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502226539 | G->C | LOC_Os05g04720(LOC_Os05g04720.1) | Synonymous |