Detailed information of SNP:
|
SNP ID:
sf0502245026(Gbrowse)
Chromosome: chr05 Position: 2245026 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 56.63% | 43.37% |
| All Indica | 798 | 88.47% | 11.53% |
| All Japonica | 497 | 6.64% | 93.36% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 210 | 77.14% | 22.86% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502245026 | G->A | INTERGENIC | None |