Detailed information of SNP:
|
SNP ID:
sf0502284318(Gbrowse)
Chromosome: chr05 Position: 2284318 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.28% | 38.72% |
| All Indica | 799 | 86.86% | 13.14% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502284318 | C->T | LOC_Os05g04800(LOC_Os05g04800.1) | INTRON |