Detailed information of SNP:



SNP ID: sf0502285066(Gbrowse)

Chromosome: chr05

Position: 2285066
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 72.28% 27.72%
All Indica799 99.62% 0.38%
All Japonica496 23.39% 76.61%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 98.59% 1.41%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica334 5.99% 94.01%
Tropical Japonica94 70.21% 29.79%
Japonica Intermediate68 44.12% 55.88%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 76.19% 23.81%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0502285066 T->C INTERGENIC None