Detailed information of SNP:
|
SNP ID:
sf0502297025(Gbrowse)
Chromosome: chr05 Position: 2297025 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 55.32% | 44.68% |
| All Indica | 799 | 86.23% | 13.77% |
| All Japonica | 497 | 6.24% | 93.76% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502297025 | G->T | INTERGENIC | None |