Detailed information of SNP:
|
SNP ID:
sf0502333707(Gbrowse)
Chromosome: chr05 Position: 2333707 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 73.80% | 26.20% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 492 | 27.44% | 72.56% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 7.51% | 92.49% |
| Tropical Japonica | 92 | 79.35% | 20.65% |
| Japonica Intermediate | 67 | 55.22% | 44.78% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502333707 | G->A | LOC_Os05g04850(LOC_Os05g04850.1) | INTRON |