Detailed information of SNP:
|
SNP ID:
sf0502391917(Gbrowse)
Chromosome: chr05 Position: 2391917 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 79.76% | 20.24% |
| All Indica | 799 | 86.11% | 13.89% |
| All Japonica | 496 | 73.59% | 26.41% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502391917 | C->T | INTERGENIC | None |