Detailed information of SNP:
|
SNP ID:
sf0502468994(Gbrowse)
Chromosome: chr05 Position: 2468994 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 60.38% | 39.62% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 492 | 5.89% | 94.11% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502468994 | A->G | INTERGENIC | None |