Detailed information of SNP:



SNP ID: sf0502492356(Gbrowse)

Chromosome: chr05

Position: 2492356
Major allele: C

Minor allele: G

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of G(minor allele)
All1419 97.96% 2.04%
All Indica799 99.87% 0.13%
All Japonica497 94.77% 5.23%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 92.84% 7.16%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0502492356 C->G INTERGENIC None