Detailed information of SNP:
|
SNP ID:
sf0502503492(Gbrowse)
Chromosome: chr05 Position: 2503492 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 71.57% | 28.43% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 487 | 21.56% | 78.44% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 86 | 87.21% | 12.79% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502503492 | T->C | INTERGENIC | None |