Detailed information of SNP:
|
SNP ID:
sf0502517714(Gbrowse)
Chromosome: chr05 Position: 2517714 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1360 | 96.91% | 3.09% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 441 | 90.48% | 9.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 286 | 93.36% | 6.64% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 62 | 70.97% | 29.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502517714 | T->C | LOC_Os05g05160(LOC_Os05g05160.1) | UTR_3_PRIME |