Detailed information of SNP:
|
SNP ID:
sf0502519171(Gbrowse)
Chromosome: chr05 Position: 2519171 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 72.03% | 27.97% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 495 | 23.84% | 76.16% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502519171 | A->G | INTERGENIC | None |