Detailed information of SNP:
|
SNP ID:
sf0502657322(Gbrowse)
Chromosome: chr05 Position: 2657322 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.21% | 32.79% |
| All Indica | 799 | 49.81% | 50.19% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 50.40% | 49.60% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 44.55% | 55.45% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0502657322 | C->T | INTERGENIC | None |